How to include vm argument on command line?

I have a runnable jar that I want to run on AWS EMR. I need to provide a couple of args and a VM arg. How do I do that?

java -jar myjar.jar arg1 arg2 arg3

How and where do I include vm argument?

I put this in my VM argument on eclipse

-Dncsa.hdf.hdf5lib.H5.hdf5lib=/home/gbachani/HDFView-2.11/HDFView-2.11.0-Linux/HDF_Group/HDFView/2.11.0/lib/libjhdf5.so

How do I set it up for AWS EMR?